As I rummaged through the kitchen for a cozy fall treat, the aroma of cinnamon and nutmeg reminded me of crunching leaves beneath my feet. That’s when I decided to whip up these delightful Apple Crumble Cupcakes. Each bite offers a tender, spiced cupcake base filled with juicy apples and topped with a buttery crumble, merging the essence of apple pie in a charming cupcake form. Not only are these treats quick to prepare, but they also effortlessly impress at gatherings, making them an instant crowd-pleaser. Plus, with gluten-free and vegan options available, everyone can savor this seasonal delight. What’s more enticing than a heartwarming dessert that invites everyone around the table? Are you ready to bring fall flavors into your kitchen?

Why are these cupcakes a must-try?
Irresistible Fall Flavor: These Apple Crumble Cupcakes capture the delightful essence of autumn with every bite, blending warm spices and sweet apples.
Effortlessly Simple: With easy steps, even beginner bakers can create a stunning treat without any hassle.
Versatile Options: Gluten-free and vegan substitutions ensure everyone can indulge, making it perfect for gatherings.
Crowd-Pleasing Delight: These mini apple pies in cupcake form are bound to impress your guests, bringing a smile to everyone’s face.
Quick Bake Time: Ready in just 25 minutes, you can whip up a fresh batch to satisfy those cravings any time!
Elevate your dessert game and embrace those cozy vibes with these delicious cupcakes!
Apple Crumble Cupcakes Ingredients
For the Batter
• All-Purpose Flour – Provides structure; substitute with gluten-free flour blend if needed.
• Light Brown Sugar – Adds sweetness and moisture to your batter.
• Ground Cinnamon & Nutmeg – Enhance flavor, giving that warm spice profile.
• Unsalted Butter (cold & softened) – Creates a flaky crumble topping; use vegan butter for a dairy-free twist.
• Eggs – Add structure and moisture; consider flax eggs for a vegan option.
• Vanilla Extract – Provides depth of flavor that complements the apples.
• Sour Cream (or plain yogurt) – Ensures moistness; can be substituted with plant-based yogurt for vegan options.
• Milk – Incorporates moisture; use plant-based milk for a deliciously dairy-free alternative.
For the Apple Filling
• Medium Apples (Honeycrisp, Gala, or Fuji) – Bring sweetness and texture; substitute with your favorite apple variety.
• Granulated Sugar – Sweetens the apple filling; adjust to taste as needed.
• Lemon Juice – Balances sweetness and enhances apple flavor for a fresher taste.
• Flour – Helps to thicken the filling and holds the apple mixture together.
For the Crumble Topping
• All-Purpose Flour – Provides structure to the crumble; swap with a gluten-free blend if necessary.
• Brown Sugar – Adds sweetness and a slight caramel flavor to the topping.
• Cold Unsalted Butter – When cut in, it creates that desirable flaky texture; vegan butter works great here, too.
• Ground Cinnamon – For a fragrant spice kick in your crumble; feel free to add nuts for extra crunch!
For Garnishing
• Caramel Sauce – Drizzle on top for a sweet finish that gets everyone drooling.
• Powdered Sugar – A light dusting adds extra sweetness and a gourmet touch.
Experience the joy of baking with these Apple Crumble Cupcakes, perfect for a cozy fall afternoon!
Step‑by‑Step Instructions for Apple Crumble Cupcakes
Step 1: Prepare Crumble Topping
In a mixing bowl, whisk together the all-purpose flour, light brown sugar, ground cinnamon, and nutmeg until well combined. Cut in the cold, unsalted butter using a pastry cutter or fork until the mixture resembles coarse crumbs. Once done, refrigerate the crumble topping for about 20 minutes to ensure it stays flaky when baked.
Step 2: Make Apple Filling
While the crumble chills, prepare the apple filling. In a separate bowl, combine the diced apples, granulated sugar, lemon juice, ground cinnamon, nutmeg, and a tablespoon of flour. Mix thoroughly to coat the apples evenly; set this aside so the flavors can meld together while you work on the cupcake batter.
Step 3: Prepare Cupcake Batter
Preheat your oven to 350°F (175°C) and line a muffin tin with cupcake liners. In a large mixing bowl, whisk together the all-purpose flour, baking powder, baking soda, and salt. In another bowl, cream the softened unsalted butter and light brown sugar until fluffy, approximately 3-4 minutes. Add the eggs and vanilla extract, blending well to create a smooth mixture.
Step 4: Combine Ingredients
Slowly alternate adding the dry ingredient mixture and the sour cream into the wet ingredients, stirring gently until just combined. Take care not to overmix the batter, which helps ensure your Apple Crumble Cupcakes remain tender and moist. Once combined, it’s time to start assembling.
Step 5: Assemble and Bake
Scoop the cupcake batter into the lined muffin tin, filling each cup about two-thirds full. Spoon a generous amount of the prepared apple filling on top of the batter, then sprinkle the chilled crumble mixture over each muffin. Bake in your preheated oven for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
Step 6: Garnish (Optional)
After baking, let the cupcakes cool in the tin for about 10 minutes before transferring them to a wire rack to cool completely. Once cooled, drizzle with caramel sauce or dust with powdered sugar for an extra touch of sweetness. These Apple Crumble Cupcakes are now ready to bring comfort and joy to your fall gatherings!

Expert Tips for Apple Crumble Cupcakes
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Cold Butter is Key: Ensure your butter is cold when preparing the crumble topping; this helps achieve a flaky, buttery texture that won’t go soggy.
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Don’t Overmix Batter: Mix your cupcake batter until just combined to avoid dense cupcakes. Overmixing can lead to toughness, which we don’t want!
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Quality Apples Matter: Choose sweet apples like Honeycrisp or Fuji for the best flavor impact. Experiment with different varieties to find your perfect blend!
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Let Them Cool Down: Allow cupcakes to cool completely before adding garnishes like caramel sauce or powdered sugar, ensuring they don’t melt or become sloppy.
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Use Muffin Liners: For easier cleanup and to prevent sticking, always line your muffin tin with cupcake liners. It’ll make serving a breeze!
What to Serve with Apple Crumble Cupcakes?
These delicious treats are perfect for creating a cozy, inviting meal that’s sure to impress your family and friends.
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Warm Spiced Cider: A comforting sipping option that complements the spiced flavors of the cupcakes, enhancing the fall experience. Its warmth will wrap around you like a hug on a crisp day.
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Vanilla Ice Cream: The cool creaminess of vanilla ice cream beautifully contrasts with the warm cupcakes, creating a delightful melting moment with each bite.
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Chai Tea: This aromatic tea, rich with spices, pairs wonderfully with the flavors of apple and cinnamon. It offers a soothing warmth that makes dessert time feel special.
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Salted Caramel Sauce: Drizzling this over the cupcakes enhances their sweetness and adds an enticing salty bite, turning each cupcake into a gourmet experience.
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Nutty Granola: Sprinkling homemade or store-bought nutty granola on top adds a crunchy texture, making for a fun and satisfying addition to your cupcake experience.
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Roasted Brussels Sprouts: For a savory counterbalance, serve these alongside the cupcakes. Their earthy flavor and slight bitterness pair surprisingly well with the sweetness of apples.
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Autumn Salad: A fresh salad with mixed greens, apples, walnuts, and a tangy vinaigrette brightens up the meal, adding a crisp, refreshing element that complements the cupcakes.
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Chocolate Milkshake: For a playful twist, a rich chocolate milkshake can be a decadent beverage option, providing a contrasting flavor that kids and adults alike will adore.
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Pumpkin Spice Latte: Celebrate the season with this classic coffee drink; its spices echo the flavors of the cupcakes while offering a jolt of energy for your gathering.
Apple Crumble Cupcakes Variations
Feel free to play around with these delightful Apple Crumble Cupcakes and tailor them to your taste!
- Gluten-Free: Substitute all-purpose flour with a gluten-free flour blend for a safe, delicious alternative.
- Vegan: Use plant-based butter, flax eggs, and plant-based yogurt to transform these into a vegan treat that still delights!
- Nutty Altitude: Add chopped walnuts or pecans to the crumble topping. They’ll add that lovely crunch and nutty flavor, making each bite even more satisfying.
- Spicy Twist: Incorporate ginger or cloves into the cupcake batter for a spicy surprise that elevates the autumn vibes! These subtle spices will dance harmoniously with the apples.
- Mini Treats: Scale down your recipe to mini cupcakes for a bite-sized version! Perfect when you want just a little taste of fall without the full cupcake indulgence.
- Creamy Finish: After baking, top with cream cheese frosting for a rich and creamy complement to the spiced cupcake and crunchy crumble.
- Dried Fruits: Toss in some dried cranberries or raisins in the apple filling for an unexpected burst of flavor. They balance well with the sweetness of the apples.
- Cinnamon Swirl: Swirl in a cinnamon-sugar mix into the cupcake batter before adding the apple filling for an extra layer of flavor and sweetness.
Get creative and let each variation inspire your own twist on these comforting cupcakes! And if you’re looking to incorporate more seasonal flavors, check out my Pumpkin Spice Cupcakes or Pear Crisp Bars for delightful options!
Make Ahead Options
These Apple Crumble Cupcakes are perfect for meal prep, allowing you to enjoy homemade goodness even on your busiest days! You can prepare the crumble topping up to 24 hours in advance—just mix the ingredients and refrigerate to keep it fresh and flaky. Additionally, the apple filling can be made ahead and stored in the fridge for 3 days to enhance its flavor. When you’re ready to bake, simply mix the batter and assemble the cupcakes with your prepped components; then, bake as instructed. This way, you maintain the quality and flavor, resulting in just as delicious treats without the stress of last-minute preparations!
How to Store and Freeze Apple Crumble Cupcakes
Room Temperature: Store the cupcakes in an airtight container at room temperature for up to 3 days for the best flavor and texture.
Fridge: If you prefer, you can refrigerate them for up to a week. Just be sure to cover them well to prevent them from drying out.
Freezer: To freeze, wrap each cupcake individually in plastic wrap and then place in a freezer bag for up to 3 months. Thaw in the fridge or at room temperature.
Reheating: To enjoy them warm, pop them in the microwave for 10-15 seconds or reheat in an oven at 350°F (175°C) for a few minutes before serving. Perfect for savoring the delightful flavors of your Apple Crumble Cupcakes!

Apple Crumble Cupcakes Recipe FAQs
How do I choose the right apples for my Apple Crumble Cupcakes?
Absolutely! For the best taste, I recommend using sweet apple varieties like Honeycrisp, Gala, or Fuji. They bring a delightful sweetness and hold their shape during baking. If you prefer a tart flavor, consider using Granny Smith apples. Don’t hesitate to mix different varieties to create your own unique flavor profile!
What is the best way to store Apple Crumble Cupcakes?
You can store these delicious cupcakes in an airtight container at room temperature for up to 3 days. To keep them fresh in the fridge, simply ensure they are well-covered, and they’ll last about a week. For longer storage, they’re freezer-friendly; wrap each cupcake individually in plastic wrap and freeze for up to 3 months.
Can I freeze Apple Crumble Cupcakes? How?
Yes, you can freeze these scrumptious cupcakes! First, allow them to cool completely. Wrap each cupcake tightly in plastic wrap to maintain moisture and flavor, then place them in a freezer-safe bag or container. When you’re ready to enjoy them, simply thaw at room temperature or place in the fridge overnight. For a warm treat, gently reheat in the microwave for 10-15 seconds or in an oven at 350°F (175°C) for a few minutes.
What should I do if my crumble topping isn’t getting crunchy?
If your crumble isn’t as crunchy as you’d like, check that your butter was sufficiently cold when mixed in. The cold butter creates a nice flaky texture. Also, try baking a bit longer if needed, watching closely to prevent over-browning. If you’re up for it, consider adding chopped nuts like walnuts or pecans to the crumble for extra crunch and flavor.
Can I make these cupcakes vegan?
Very much so! To make your Apple Crumble Cupcakes vegan, substitute regular butter with vegan butter, and replace eggs with flaxseed meal (1 tablespoon of flaxseed mixed with 2.5 tablespoons of water is a great alternative for one egg). Use a plant-based yogurt and milk for moisture as well. With these swaps, everyone can enjoy the delicious fall flavors!
How long does the flavor last in storage?
These cupcakes are best enjoyed fresh, but if stored correctly, they’ll maintain their delightful taste for up to 3 days at room temperature. If refrigerated, they can last for about a week. When frozen, they’ll enjoy a flavor preservation period of up to 3 months, just make sure they are well-wrapped!

Irresistible Apple Crumble Cupcakes for Cozy Fall Moments
Ingredients
Equipment
Method
- In a mixing bowl, whisk together the flour, brown sugar, ground cinnamon, and nutmeg. Cut in the butter until the mixture resembles coarse crumbs. Refrigerate for 20 minutes.

- In a separate bowl, combine diced apples, granulated sugar, lemon juice, cinnamon, nutmeg, and flour. Mix thoroughly and set aside.

- Preheat your oven to 350°F (175°C) and line a muffin tin with cupcake liners. In a large bowl, whisk together flour, baking powder, baking soda, and salt. Cream butter and brown sugar until fluffy. Add eggs and vanilla, then blend well.

- Slowly alternate adding the dry ingredients and sour cream into the wet ingredients, stirring gently until just combined.

- Scoop the batter into the muffin tin, fill each cup two-thirds full, top with apple filling, then sprinkle crumble topping. Bake for 20-25 minutes.

- Cool in the tin for 10 minutes before transferring to a wire rack. Drizzle with caramel or dust with powdered sugar before serving.


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